PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499884.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 726aa    MW: 78504.8 Da    PI: 6.1112
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07305325526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_004499884.1 305 PCPDFRK-GACRRGDMCEYAHG 325
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1834180IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.5E-1839179IPR020683Ankyrin repeat-containing domain
CDDcd002044.50E-1539179No hitNo description
PfamPF127961.8E-1082155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.2987179IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009287117IPR002110Ankyrin repeat
PROSITE profilePS5008811.835122157IPR002110Ankyrin repeat
SMARTSM002481.9E-4122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6300326IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5305325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4305327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4333363IPR000571Zinc finger, CCCH-type
SMARTSM0035624335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MCGGPEKSKS LSTSSSSSPS AVEGSNNVKD MKNLTVHTDD SFSSLLELAS NNDFEEFKVA  60
LDSSASLINE VGFWYVRQNG SKQIVLEHRT PLMVAASYGS IDILKLILSC PEADVNFSCG  120
TDKSTALHCA ASGGSVNAID AVKLLLSAGA EINCVDANGN RPVDVIVFPP KLEGVKIILG  180
ELLSDSTSDG SVDDCSLPVS IDSSSPGSAA PSSSIENGYP TSPVALKFTD PAVNSTPEKR  240
EYPIDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCNRR VCFFAHIAEE  360
LRPLYVSTGS AVPSPRSSAS APNVMDMAAA MSLFPGSPSS MSSMSPSPFA QPISPSANGI  420
SHSNNAWPQP NVPALHLPGS NIQTSRLRSS LSARDMPLED FHNMLQDFDG QQHILNDMGC  480
FSQPRPGAIS VSRPGRSKIL TPSNLDDLFC AEISSSPRYS DPAPASVFSP THKSAVFNQF  540
QQLQSSLSPI NTNVMSPKNA EHPLFHQASY GVSSPGRMSP RSMEPLSPMS ARMSAFAHRE  600
IQQQQLRSLS SRELGANNSV SVVGSPVNSW SKWGSPNGKA DWSVNGNEFG RSQRSTSFEH  660
GNNGEEPDLS WVQSLVKESP PEIKEKLAGS GPIASAEMNS NPQVDSIDHS VLGAWLEQMQ  720
LDQLVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499884.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0B2NTX80.0A0A0B2NTX8_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLI1L2G50.0I1L2G5_SOYBN; Uncharacterized protein
STRINGGLYMA09G15600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain